Updated Gene Prediction of the Cucumber (9930) Genome …
WEBJun 9, 2024 · This enhanced version of the cucumber 9930_V3 genome annotation gives researchers in bioinformatics and molecular biology an extraordinarily accurate gene structure prediction model, paving the way for more profound insights into …
Cucumber (Chinese Long) v3 Genome - Cucurbit Genomics
WEBDescription. The version 3 of the cucumber 'Chinese Long' genome was assembled using PacBio long reads,10X Genomics and high-throughput chromosome conformation capture (Hi-C) data. For more information, please check.
The genome of the cucumber, Cucumis sativus L. - Nature
WEBNov 1, 2009 · Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA sequencing technologies to...
Cucumber_9930_V3 - Genome - Assembly - NCBI
WEBCucumber_9930_V3. Organism: Cucumis sativus (cucumber) Submitter: The Cucumber Genome Initiative. Date: 2019/11/15. Assembly type: Assembly level: Chromosome. Genome representation: full.
chromosome-scale genome assembly of cucumber (Cucumis …
WEBJun 18, 2019 · High-quality genomic DNA was extracted from young leaves of “Chinese long” inbred line 9930 cucumber, using a modified cetyl-trimethylammonium bromide (CTAB) method . Genomic DNA was sheared to a size range of 15–40 kb using a Megaruptor (Diagenode) device (Belgium), and was then used for single-molecule real time (SMRT) library ...
Graph-based pan-genome reveals structural and sequence
WEBFeb 3, 2022 · We constructed a protein-coding gene-based pan-genome for cucumber by clustering 299,692 predicted gene models from the 11 accessions and 9930, which resulted in 26,822 non-redundant pan-gene...
Updated Gene Prediction of the Cucumber (9930) Genome …
WEBJun 9, 2024 · This improved annotation of the cucumber genome will provide essential and accurate resources for studies in cucumber. Keywords: cucumber; gene model; manual reannotation; tissue-specific expression; transcriptome.
Gynoecy instability in cucumber (Cucumis sativus L.) is due to …
WEBMar 15, 2020 · It is known that the F gene in cucumber has a dosage effect, and the F 1 from gynoecious (FF) × monecious (ff) cross is subgynoecious (Ff, SubG). Indeed, of 16 Gy14 × 9930 F 1 plants observed...
Characterization and expression profiling of cucumber kinesin …
WEBSep 10, 2013 · The ‘Chinese long’ inbred line 9930 is a cucumber cultivar grown in northern China with an available genomic sequence (Huang et al., 2009). This cucumber cultivar was grown in a greenhouse as described in the Materials and methods.
Cucumber (Chinese Long) v2 Genome - Cucurbit Genomics
WEBThe sequenced cucumber genome affords insight into traits such as its sex expression, disease resistance, biosynthesis of cucurbitacin and 'fresh green' odor. We also identify 686 gene clusters related to phloem function.